Code Graph RAG is an AI-powered knowledge graph and retrieval system for querying, understanding, and editing multi-language codebases. Prior to 0.0.589, AstGrepService in codebase_rag/tools/ast_grep_service.py enumerates files beneath project_root and relies on should_skip_path in codebase_rag/utils/path_utils.py to classify them, but the containment check operates on unresolved lexical paths. A symbolic link planted inside an analyzed repository can therefore reference a file outside the configured root while still appearing in scope. The structural_search tool follows the link and discloses readable content without an approval gate, while structural_replace with dry_run=False follows it a